NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1000124

Scaffold Ga0209596_1000124


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1000124 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67829
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (80.77%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036080Metagenome / Metatranscriptome170Y
F043832Metagenome / Metatranscriptome155Y
F051683Metagenome143Y
F053035Metagenome / Metatranscriptome141Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100012454F058556GAGGMNTFVVEHEYKGHPMFETITGVEDIDLSMFDKILTLWVCDNQEEVNAVESELRRKHARHS
Ga0209596_100012456F051683AGGAMILELDDDFTDEITRVNLAESYVGVLGMMKNGDAWHEDDVKAWKELLPAIKLVGSWYSTDFDADIKKAKKRK
Ga0209596_100012457F036080N/AMNSKIDLESAIMLAWQTSDDINLLYKHHGDHPVPMTEDDVGNALWGIKVLHDMRMEKLMDTYCRKMELNEYCTDPEKLAARETMFQTPKKKGSKK
Ga0209596_100012469F053035N/AMNPFELRFSIFNTAKDLMIKQHEANLAAWEVINKTTKEAEELAPQFPTMEEIIDKAIEINTFISGSTTRELTSLAKKMTGVGIVF
Ga0209596_100012473F043832N/AMCDRMIELGTQGASQKMIWADLGITKDVAANWRKKYPEFADALDMALVHSQAYWEREMLANVGNKAFNSRIAEIALRGQFPQDYKDVREIKADIKQEVKIDFAGEVNDLIKQLRANAT
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