Scaffold Ga0209596_1000084

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000084
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82688
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 107 (78.68%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F001515	Metagenome / Metatranscriptome	679	Y
F005558	Metagenome	396	Y
F018164	Metagenome / Metatranscriptome	236	Y
F018698	Metagenome / Metatranscriptome	233	Y
F020883	Metagenome	221	Y
F029734	Metagenome / Metatranscriptome	187	N
F036663	Metagenome / Metatranscriptome	169	N
F053803	Metagenome	140	N
F055673	Metagenome / Metatranscriptome	138	Y
F060854	Metagenome / Metatranscriptome	132	N
F064418	Metagenome / Metatranscriptome	128	N
F070030	Metagenome / Metatranscriptome	123	Y
F073288	Metagenome / Metatranscriptome	120	Y
F078625	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_1000084107	F020883	GAGG	MEASFMIAQVETTMSNYTNQHHRLGMRDLAIWQSLGSYYADPEDYDIVLTSTREEAFDRMVADHWHVRVSDAFFGLDYEGIDEEVLDYLKGNKLVASTDEEEEE
Ga0209596_1000084114	F070030	AGGAGG	MIHLVSVVLICAYCNSEIERRTELEAREALAEHQNYVQCMKNY
Ga0209596_1000084115	F064418	N/A	MYEELLMGKPRPTEIRLVAKLLDPDAENSEDAAALAIEIIEALDNSRLKRESFIVVAKLADWVPLQAWGEFSTRLQAEKFFPHLSAPGPDTGGKGAIARLENPDDLLKRIGAQ
Ga0209596_1000084128	F053803	AGGA	MAIDIELTLDETMDALRFIHLVRENKKQYEVVDKKFDRNNSSYSVNLMGQLGEMACGKGLGLQVDRSISPSGDNGHDLSTPLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQLPHVDSKFSILGWTTRELFLANHYKHDYGYGIRLVMDADQLQPIEVLINEVSRL
Ga0209596_100008415	F018698	GGAG	MADNYEYEIEDDEDYSGSDLVKKLRKQIDGLQKSLKEKESLIEEFTTYSHESSVGEILESFGLNPRIAQFIPSEVEADADAIAEWLNEYGDAFGIEAVEEGGEASSDAQAYEHMSSLDDGNIDPYVGQDLQSRIGNAGTKEELMKLIQG
Ga0209596_10000842	F000368	AGGAG	MNAKFQAAALSWFRAAASAAVALYLVGETDLKTLGMAALTGFLGPVLKWLDQSSTDFGRGVE
Ga0209596_100008420	F055673	AGGAG	MRVLKKFEENLEYLGFDLAPLAWDIAKMQFPSDDDRLALLEELTVKKEAAPGVNDGMVE
Ga0209596_100008424	F078625	AGGAG	MFGKQGKMTKAPTSSAIMGKKPAGKGIGLGQVDVAKAPKTIKGSKNKLK
Ga0209596_100008434	F005558	GGAGG	MKMTNDSISWGELAELTHQIQVERFQFCMCEDNEGNENPYADCPKGEGNE
Ga0209596_100008441	F070030	N/A	MGSEERSMIHIASVVLICAYCNAEIERRTELEATEALAHHQQYVQCIKNY
Ga0209596_100008442	F060854	N/A	MARPRPTEIKLVANLLDPDNTNSESASELALEIIEALDVSRGKRDSYVLVAQLARWAPVQAWGEFNTQLQAEKFVKHLTAVDIEGDGGRALIVHLEQPEKLLERIGESKK
Ga0209596_100008452	F073288	N/A	MGIATAMALVSPAQALSPILTQEVRMSVMTKEQKVEYAIAQFVTEKEQRLCAKRIAYKESRYNTDSFNKSSGARGVWQLLWGKPHWSILKQTQEAHKYVLHRYDTWCGAYRFHQERNWY
Ga0209596_100008456	F001515	N/A	MAVENLSSFDLDFRFGQEGESLVNQLLTEGGTVEVKRDRKWWSTNNLYIEVECWYRRSQNWEPSGVMVTKAAYWAFVLERGVLMVPTGHVLYAIKKFGREITCEIPPNRSKGYLITVENLLDVMKELKND
Ga0209596_100008462	F036663	N/A	VEDNKLIPLVSLGERNELVNQVRLALNVAGDDVLDAPLAELLRGLQHRLSIPAVGCINIATLDALAVAPPEW
Ga0209596_100008466	F000368	AGGAG	MNAKFQAIALSWFRAAASAAVALYLAGQTDLKVLGTAALTGFLGPVLKWLDGSSTDFGRGAE
Ga0209596_100008477	F018164	AGG	MAKVFRGPTYKYRPGREYDLWFVSYPIGKSVVKTGGVWKTIVVPQDSDLATYQRVLRGGYDNVITDAEAVELAAAGYGDYVFNV
Ga0209596_10000849	F018164	AGG	MVMAKIFRGPTMRIKLGMQNDLWFVSYPWGKTVVKDNGIWKTIVSPQDSSLASYQKVLRGGYDNPITDAEAAELTAAGYGDYVVEV
Ga0209596_100008492	F078625	AGGAG	MFGKQGKSAKAPTSTAIMGKKNGGKVVGGGMVKQGTLSKGTKGNNNKLK
Ga0209596_100008496	F029734	AGGGGG	LALTKGTQMRTVETKALVGVVKNGVVHVSKPNDKRIFAKVRITTNTAKSSKKIEAILASFKAYPNFTTVLAEIQKVEPKAYLTLKGGQA