Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1000004 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1000004 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	248376
Total Scaffold Genes	330 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	75 (22.73%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

248376

Total Scaffold Genes

330 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

75 (22.73%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010397	Metagenome / Metatranscriptome	304	Y
F016969	Metagenome / Metatranscriptome	243	Y
F021517	Metagenome / Metatranscriptome	218	Y
F029414	Metagenome / Metatranscriptome	188	Y
F090384	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_1000004104	F021517	N/A	MIKLKHLVENSTETAYAPLSKEEKIKLRETIKSYNEYRKSLKASVVYETANKIMEAVNLAERYAIKECNEWMEAKMVERDMKDVKKMAQKLYEEAHKIKSVEQQLEMLYEEIGLKLERYFEIADPIEVQQGTATPTSQPAAPAPMKSVESK
Ga0209596_1000004217	F090384	N/A	MPNLKELGDLGDRMMQGLPFGQGGAVSGTSNLDTFSSPDVTQDPSKFGTLSDKSNLTAADTQAAVTPFGPFTGQNPWDYVRDVEQIKYKVTPDEVITGMDYEMKKLVLKDRQVARTNVVKNLKKDPKYYSKLHMLGVFPDEKDEALMEVMVTLKAQKYAIHRREYF
Ga0209596_1000004257	F010397	GAGG	MNETVDTIDATNISEFERNKPVVTMKKLNDLLVRIDEERIKTEILYKDRVRSLDEIKNLLYSVKDSFKKGE
Ga0209596_100000436	F029414	N/A	MILLKDLLNEAQPELTVYRGVNPTYGDIGLGINSTKIGDKLVATLGPNHTNNIEVAKKFGKQITTTKLKGPGLELSHYNDIIKLYKQYENMLPVGLAGKIKNSNGQAQLDLIQLAGKDLRNILSKRYGYIKSPLAISDASYLSEKGLTGDLYIPLK
Ga0209596_100000462	F016969	N/A	MSNTIKISKADAQKKVYELTETLLFTKKDFKDVATGYKERIKEIENEIKAVVEESGTVTPTSTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences