Scaffold Ga0209192_10131782

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10131782
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1003
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018265	Metagenome / Metatranscriptome	236	Y
F024888	Metagenome	204	Y
F051476	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_101317821	F051476	GAG	MTYWKAKLIIKNKLHKTELFESLSKARLWSMKEAKLTVSHRMFNCTDIVTEITSHEFA
Ga0209192_101317822	F024888	GAG	MEIDLKNIHKIAGEMVDGIEQIEMEGKTPDEYAQERGFSTWMEYAAWSRHTGGDYQMMVYALKSKWKEQDPEEFARQKKIQGDQSLREHSYINLPPEAWPTSVPNKNDFASNFIGNKKKKWQPVHKSNFTAEQLEKVYDDFGVSGELVEYRW
Ga0209192_101317823	F018265	GAG	MSMERHTLRAVKLTQNIFELNRVNRELVAVRRIVTELE