Scaffold Ga0209192_10128308

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10128308
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F061282	Metagenome / Metatranscriptome	132	N
F068119	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_101283081	F061282	N/A	RDKPLDLGNPPKGLIKKKFGGIDVFGVDPKLFGRSLLGKKKYGRYKSYVGEDEVGQYITAWARKYPNKPIIVMDSVTGCMQYLRHGK
Ga0209192_101283082	F001334	GGA	MYAISKTRKMKMMKFKEYLQSYADDSIEQVMDGEWILKSRATWKATDNNDNQIEIHNDGHDPELNGESWTVHNNSFAPKAFAHFCKEFIQEVKPSEVTHDRTRIYSKT
Ga0209192_101283083	F068119	GGA	MTEQESILKLNTDIQTLKIKDEYRTKELDALMKKLDASTNKLNDLSENIGRLLTAQDVNKMTDNEFREEMKILHSRIGDLQDKMNQMVDKTETRMNSDINLIYTKLESLERWRWITIGAATLVAWLLTNVIPKILP