Scaffold Ga0209192_10003434

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10003434
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10660
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036713	Metagenome / Metatranscriptome	169	Y
F067765	Metagenome / Metatranscriptome	125	N
F078667	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_1000343415	F036713	N/A	MGVFLGTYNGYDLGMEDDGRVYACFAANNPFGLTNCASFKTDVAASHYINDMFPPRKQKNLNLGEVDTETEFPTVVDLIKAGFGDQTYDMIDGLVAEGSQLIH
Ga0209192_100034346	F078667	GAG	MIAITDKLQNLPKPNVINLAECKDRRAWTESEFSRHGLDDIKVHLYDRYEEGKSIPFAGDPELIAKTTKGVTSSHLLTIKWWLENTDEEYGIFFEDDLDYEPLQYWNFTLKEYIDKCSQWEWGALQMCNVFEYPYDYKNEYIPFVPKKREMWDHGLQAYAIKRWYAEKLVEYYFGDFEDKINYRMPLGSPVTTENNILHGFGLVISFPLFNHNITDFRSKNIYFYNEQANAAVYSYEFIDLWWESKGNLLSLDEIFDNEREADKIYGELK
Ga0209192_100034348	F067765	AGGA	MPTKNKDNLIHFPKIHSNPPINEESVAEKIRDYKESYSSELAEIIWENVLGEMARAGCDFDEDFETYFPGMILIFEAIRSLHLQTMGTEHQLQPFALQNVVIMDSDEERVQGGLKKTLNEETIDIDEDL