Scaffold Ga0209192_10000361

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10000361
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47723
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (70.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F034245	Metagenome / Metatranscriptome	175	N
F048328	Metagenome / Metatranscriptome	148	N
F067759	Metagenome / Metatranscriptome	125	Y
F089156	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_1000036127	F067759	AGGA	MDERNQPQPVEQEVYAQKGNLEAHIIADMLRIESITTELREFKDDTKQRLNKLENWLVAIVGTSFTTLIAVVIGLVINLFGK
Ga0209192_100003614	F022909	N/A	MVRIGRRQMANSNNQKILRTFFDGKIGCVELDDYWMPKLEQFCKIAGDLGFKQNASPEAMKVDSIKYHCMVHIPTEEIYAVAGVQYMPEYKDGYYRVWTRLSRIPNEHIPMTKMVRYGRGHEMPEFDGLLYYNCKWANEQAGFKATFGTTLANKTYSGDYVKSTNAITDYIKRNWWKRKGIAVPEGIQDFYSVPQVIWNINFEKFKEFSV
Ga0209192_1000036140	F048328	N/A	MTSGTAHTLYNLGYQTVDLVLSADGIYVDNRPMNQTKLVVHKGLNNQLNFHVRNRDRVKQNLSTKTLYATVINPNTSKRVIFKPLTLVGGGTTGEARLDLNLGDIQDLIPGLYQIAISESADSGATQTPLYANQNDRIVTDLEVKSSLEYDPSPTQTAAVFTRTASLGVDGVDSFATSSLYGNQDKNFRHSRHTIALYMTNFVGSVKIQGSALESAPTQDSDWYDINSQGDIGNPAIPYVTATSGVDPFNFTVNTNWIRVTFDQTSGTLDQVLLRN
Ga0209192_100003617	F034245	AGGAG	MRGITFSEFAGGKNVDMFLHAPDTLPGTPMQEAVKTAITIREKYTKDIYVWCDYSVQHMYSQLAMQAFKMANIDFTAAIPVLSNNLSKRENDCSIAYCESRNIPYELFYIDVPELFNGPRFEYWGQHFPTTQPQMTIVGRFFDLLPDCCLVYPGFMMHVSNSEWTRSKNNGFMPFVPHATQEHAAAHAGLEYTNFQEHYVNMYSSWFFTPSYGEVFNLPTQEFVDNAPHRYYQYEMRTIKQAGFDIKATTQKLIGIELLKSFFGHDKYDKELRQKLSPYGPLTMKYASLQYTVKVDTKLKEMIEKHYENNFEFLNKLF
Ga0209192_100003618	F089156	N/A	MVLIQFKNTIDTDTLPVNVIQYLRHSTYLLDVQLTDYEHINTITSDYEVVSMQSNDDCAYIDVLERLTTSYTVILAEDKLTHLIEKLDLLAMSEPQIVCISWQMDRNYIVDFRITELLKAGHTVVCAGGNHDLPVLDISPVAVDGVVRVGGFKHEGKFQNWIDLYDITVPGITCSNEAVHRVCELMANKELELEYKLDFYSESHIRSAPWPLRLAQTPSNSHKHYEFSPVSNLRYIAGEHLLPVRPGDTVSVLSGSVALSSFSAPEHVDMKQEMPRGITFDPTVGWLYGTFKYKEAMFHRILADINGQLFEYHIISCDADSKPSFEEVRENYFNRPYDAPPFTLREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYRSYE