NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10000219

Scaffold Ga0209192_10000219


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10000219 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66849
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (8.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002047Metagenome / Metatranscriptome599Y
F004866Metagenome420Y
F005243Metagenome / Metatranscriptome407Y
F006666Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0209192_1000021916F002047N/AMKQKISLPEVVSKDRDALVRKGFLDLNEGQYTMTPQALAICGTLDSYFIKAKKKTDIQLMGKDFVEKINDYREVFPARKLPSGKPARNNVKALGEAFRWFFETYDHTWEEVHKATRMYVNEYRDADYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEDEHFKETVV
Ga0209192_1000021945F005243N/AMTDFKTNENLQDKDPKMSKKEMAERREEITAFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMYMAQQYAAQKGEGAPDPESPEGKAFQDAMAKAMTNETA
Ga0209192_1000021947F004866GAGMAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKSIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLIKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS
Ga0209192_1000021948F006666N/AVNPKSHKDLRKGIADEVGVHPTVVDDFISFYYAKVRKKLSTLAYPRINIDGLGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAQSEDIHKNIVEMESAMKQLEKDIKIKKKFRNER

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