Scaffold Ga0209084_1005256

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1005256
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8855
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (96.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F036063	Metagenome	170	Y
F049484	Metagenome / Metatranscriptome	146	Y
F061653	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10052561	F036063	AGGA	MRKVTPAHVLAINMLVLKTTEDYINFSTTQWGVNSPVTADNLKYSTLDVQHNINALVAFNADLNAQKLHDSIMLQDTFVREYYIDTLRYIESNKLINSNMFCCV
Ga0209084_100525622	F061653	AGGA	MRYPFTYRVVTDHSSKDDAKLMEDGRQILVETNNYLVARRECIEWAAYDDILVQVLRPWGAVKFTCDGAYEAETRYPKTVDAMTV
Ga0209084_100525623	F000354	AGGAG	MAKVNYDNFRTFDINECCDHFDSEKQGNWKKIGKFIIADGQEYVNVMETEFDFEDTTDSEYMAFDSGIKYALTKLNAAFEAAGIDLEIQTADMVESMGFMLVRTDDTPEDFVKRVLKKPVMMVESWVD
Ga0209084_100525627	F049484	AGGAG	MITAEQIQQGKILAEQASIGMYEQMGRKDQFACGFAWVDVYVDRTNSKQAKELKAAGFKKDYKPKCLSLWN