Scaffold Ga0209084_1004462

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1004462
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9817
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (93.94%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F022415	Metagenome / Metatranscriptome	214	Y
F046380	Metagenome / Metatranscriptome	151	N
F048314	Metagenome / Metatranscriptome	148	Y
F050153	Metagenome / Metatranscriptome	145	Y
F052598	Metagenome	142	N
F057381	Metagenome / Metatranscriptome	136	N
F068423	Metagenome / Metatranscriptome	124	N
F074407	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10044621	F048314	AGG	MKDSIEQAAEMLILGYTEHEIVRILRIHPSMAEELIQKAEQWNDQEFVPYTEEVVDEMADYYGEE
Ga0209084_100446217	F052598	GAGG	LRLRLQTTFLREWKAAQMIPRFKLTVTDEFHSDFVYETNDKEDVLDRVALWLSQLDNTPIYNLNIEVN
Ga0209084_100446222	F074407	N/A	MNKKIKALAIEAGLYVDFNGEPWPKNMTGEDIEGAYEKFAVLLINECAKKVDKVRRQGGWFYGEIIRKEFGLYDRD
Ga0209084_10044623	F015732	AGGA	MTKVTNLETAVSIVRNTPDKALALSEIMNILGVSRSNAFVYHTKASKILFSASNVDEVMAKVSPQYKKVSESVQGTTATKKAQKLKEIDAFLANAPTAKGNPFAALGA
Ga0209084_100446230	F050153	GAGG	MSKGSRARPLGVDFDKYSSNWNSVFGKSPKEIDDAVIEDEAFKLIEERNKNVISDQKPD
Ga0209084_100446231	F068423	GAGG	MDEDFDFNFPMEINYEKILTNNSILPMVRLLAADLMKNPYMSIGTFLQRARTDDLQLILEASEDEEDERLSDILLLAEMLAKAEGVETECIEDVYKHLNSFITLAAVASLERKGLIIADYDVMSFGEEYAHSTIAKRKP
Ga0209084_100446233	F057381	AGGAG	MRYFFNDVEVTATEYTDLINKSTPDVPAKFVMAIPVERAVTKPKPLPKKSVAKPASSGASKIDQAIELFKNNQGLTDAQFVTLFQLKLGDISKGNASIYLKKVKERTK
Ga0209084_10044625	F046380	GGAG	MSNWKTLDQSFETMSQAEALDIVQQEAVSMGMGLLETMTWMSDNYDELDSVQRNAFRTAFRGFQRLLAPVTE
Ga0209084_10044627	F022415	AGGAG	MSRMSELHMLITDAIACDLSEDLIIDLMVEEGLPREACPEILRVFKQVEAV