Scaffold Ga0209084_1001188

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1001188
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22510
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F071153	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100118822	F071153	N/A	MYTGKLVKKEGKLTYSNPKDKLAYELFLQKIPEGQEVEMYIDLANADHSRAQINKVHACIRELAKESGYTFEEMKKIVKKRSGLCYTDSEGEFCKSFAECTKDQLMLTIQACIEIGVELNVNLQ
Ga0209084_100118829	F003038	N/A	MALSTTDLGKGTGVPKTITPGNQILKINSIHLEDFSFIEGAYHLILNVETPAIDDFEGFLIDKDDESKGHYAGQIGRLKASQYAFADGETKSGIKIQRDRSIMIFLKNLAHTYGVDEWFIAQDNKYDTIEEFVKNFSANAPIKDTYLNWCVAGKEYMGKTGYTNYDLYLPKGEGNKYSYGTSESGKVVEYNETKHLKKLEVTEKKEFGEDADLAIPSKNAADFSLD