Scaffold Ga0209084_1000502

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000502
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36769
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (76.12%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F058557	Metagenome / Metatranscriptome	135	Y
F063689	Metagenome	129	Y
F066774	Metagenome / Metatranscriptome	126	Y
F073551	Metagenome	120	Y
F082685	Metagenome	113	N
F083714	Metagenome	112	Y
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100050215	F063689	GAG	MEVLFRYLVFDDFGEPHKRFRTKHEAEVYIQNRPNHKIERLPTPPKENVFDLITDEPPF
Ga0209084_100050219	F104778	AGGA	METKAWLIEEVDQHGNVVWNITSFFEPDSLQWTKDLKGKKHNIIISRLGVIESKTINGIEKKYDSAKFVFGD
Ga0209084_100050221	F066774	AGGA	MTQDNTMGNLETWVRQLNGELDVQEVAKTRPAPIEDIVAPYSVFLRMYDKVGLCAATNKRRSSRCNIEFVFDGNTRSLKSVRMIHNEK
Ga0209084_100050236	F082685	AGTAG	MDMQEHTKHVLDTVSGLTAFGAIMNFLPAIAALLSIIWYCIRIYEWINSKINK
Ga0209084_100050237	F073551	N/A	VNDTIDDYFDFLQDKTIKGIGADSYDGKNYLVILLSDGSLAYISSDNNLYIAVEKHLIN
Ga0209084_100050246	F002085	GGA	LNPIYFYATDITWVNNSSNPVAWTNSSVQVVDWTSQAQTNIIRMADFVRVTTPTATYRFATTPKAITVSAVDSQPFDAVGSLVKIGDAARDIKSTSNETSVTLVGLDTALLGWVLSQNVKGSLIEMWHGFFDADNNLIVSGGTGGLYKFFTGYINSFSISEQWMEEIRQFVGTIVVSAASIQIILQNRTAGRYTNNNAWQFFNAGDTSMNRISYIQTINYSFGKTA
Ga0209084_100050248	F000934	GAG	MANLNNILAIAESVGINDQKFVGQMISRNQRISASEILTVQPFAFDIKPMNYLLYSQNRNLLSALRVADKSTEQYLNFGTTGWTNYINYQGDMTSGQISSCQYQTSSANKNIVLGALPSISSTAYIVKTGDFLQINRYSYIATADVQRGIDTTVVIPVHRTILNTLASPVSAVIGQYGTTVSMGGTAYTGVTFPILLRDYPTYTLVPMTNDSFINWSGTFKAFENVLT
Ga0209084_100050250	F083714	AGG	MVFNGHTIQDIDALDETTMNEIIVMYSDGVLGNNKNLVTMGTLTSGVFNYMRPPNSKSYTLKEMLGSAYNYIYREEASLPNESLLAFISQAPGFNIDKFKGKE
Ga0209084_100050258	F058557	N/A	MAIKRFENVDVNTLTFSTNSYGENVTTITKKFTGRPLVSSVKNSLQITSDTRIYQDLINFKFQYTPWIQDIVINQNLYSFTWRTQDWRITNAIEADDKMSVTILCYRSDPVTKV