Basic Information | |
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Taxon OID | 3300027747 Open in IMG/M |
Scaffold ID | Ga0209189_1012527 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4828 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (40.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F024058 | Metagenome / Metatranscriptome | 207 | N |
F024954 | Metagenome / Metatranscriptome | 203 | N |
F032162 | Metagenome / Metatranscriptome | 180 | N |
F043789 | Metagenome / Metatranscriptome | 155 | Y |
F056412 | Metagenome / Metatranscriptome | 137 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209189_101252711 | F032162 | AGG | MKQNLKISYQTFGENNAYLLEGNLKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYANPDDVKKALTKIYLHALVNKINGKGRKGGLLDLAMTKAQSIIDEMIQTCFLWGATSSEGYSLGTITAEKPSDYCGAISSGRD |
Ga0209189_101252712 | F043789 | N/A | MKKKISKYEQLLANLNKAAQDLKVASTQAVATLEAHAEKIEAINQKYSEK |
Ga0209189_10125276 | F024954 | N/A | MKEQMKNIIESLEVGKYYQIENHIAICEMFNSTSKKKCLSRISGVGSVTAFYDEVTEVEMTPELLKQCEERKNGTMNFIGNFNASSKYKGD |
Ga0209189_10125278 | F024058 | N/A | MINWNFHRRQMRENMRKNMDSTESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGEDKDKVGTINLNNAKLVKENK |
Ga0209189_10125279 | F056412 | N/A | MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFAKYEHKVEVAHHNSMIINEKQIEKIPCNSAEIC |
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