Scaffold Ga0209189_1012527

Overview

Basic Information

• Taxon OID: 3300027747
• Scaffold ID: Ga0209189_1012527
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4828
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F032162	Metagenome / Metatranscriptome	180	N
F043789	Metagenome / Metatranscriptome	155	Y
F056412	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_101252711	F032162	AGG	MKQNLKISYQTFGENNAYLLEGNLKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYANPDDVKKALTKIYLHALVNKINGKGRKGGLLDLAMTKAQSIIDEMIQTCFLWGATSSEGYSLGTITAEKPSDYCGAISSGRD
Ga0209189_101252712	F043789	N/A	MKKKISKYEQLLANLNKAAQDLKVASTQAVATLEAHAEKIEAINQKYSEK
Ga0209189_10125276	F024954	N/A	MKEQMKNIIESLEVGKYYQIENHIAICEMFNSTSKKKCLSRISGVGSVTAFYDEVTEVEMTPELLKQCEERKNGTMNFIGNFNASSKYKGD
Ga0209189_10125278	F024058	N/A	MINWNFHRRQMRENMRKNMDSTESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGEDKDKVGTINLNNAKLVKENK
Ga0209189_10125279	F056412	N/A	MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFAKYEHKVEVAHHNSMIINEKQIEKIPCNSAEIC