Scaffold Ga0209189

Basic Information
Taxon OID	3300027747 Open in IMG/M
Scaffold ID	Ga0209189_1000400 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027747 Open in IMG/M

Scaffold ID

Ga0209189_1000400 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36376
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (87.76%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36376

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (87.76%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070923	Metagenome	122	Y
F072014	Metagenome	121	Y
F078637	Metagenome	116	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_100040023	F098561	AGGA	MAITLGKDCRISIGGNVSGARNVTLTETARTIDINPFGSREASVYQTGYDCSVSVELNDSEALGDAFSNMHTGTPVQVSGGAGGFNFLAVITGISENDPIDGVATFTIDAKMTDRSLTRGGA
Ga0209189_100040027	F090310	AGGA	MSNTLRTIADRLATGLNSVTWAIPSTVVQRRNWTDLDVESMTSPRVFVVPGNADVTRISRQMMQIDYTVTVFVGRHVQTDSDVDAMLDLADSVMLQVRAHSFGQAVVWPAGVTSPQTVSIDLNPDDALTERNVWRAVITATYRVFESNVLPTA
Ga0209189_100040039	F078637	N/A	MKTEWITVEFLGGPLDGALRPVQVGVAIYYLANGAVIHAYAADEIHEGNSVRPVMSHNEVLNVSNWNA
Ga0209189_100040045	F072014	GGAGG	MSEEFEYLGAPLDVVQALMDRAWDDDVDDDTRQLLELGAKTLEHTLDRCIKLASVIEKTEAGL
Ga0209189_10004006	F102439	N/A	MSEVQRSFVDDDLPPAKGKRRRMPERLSPPMRKFLTKLARIGARVTWTIELIYDPSKGGQGELTDRAKAGDHTLVLDTVREVEYRASQLGDDIEAFMTPPDKLPAEPGHPSRVDAMARRQAARQHLFD
Ga0209189_10004007	F070923	GGAGG	VGDAPGGMLPHLRSRLRQEIGPRAVNAGRAFDEFVDAICRCWNAEHWTKLARTQPESQSAAIQDAKVLIAKVREDVEAMWGDSEQLRSLYSSVGEHTVAVFARLWFESMSNRTWMRQACREARRT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209189_1000400

Overview

Ecosystem & Geography

Associated Families

Sequences