Scaffold Ga0209189

Basic Information
Taxon OID	3300027747 Open in IMG/M
Scaffold ID	Ga0209189_1000088 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027747 Open in IMG/M

Scaffold ID

Ga0209189_1000088 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	77407
Total Scaffold Genes	123 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	101 (82.11%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

77407

Total Scaffold Genes

123 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

101 (82.11%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001629	Metagenome	660	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y
F012670	Metagenome / Metatranscriptome	278	Y
F029042	Metagenome	189	Y
F040590	Metagenome	161	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_1000088109	F000857	GGA	MTDDEVRVNEEYYSKGILESGIDGVFRQNDKLFNEVKSGTWSQTFNTPNIDYKVGAVDGVRYVQYDQKNVEEVKQFCKERREFHKVHGTENPFFAGTAHMMQLPKCFAHEISSRWFNNRPWELIKQERKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPSIPTR
Ga0209189_1000088110	F005087	AGG	MAALFIQSGNALVSRVANWVGAVPSPLVVTLTNSTGGYYNVLTPSANPLGQVVPGDFIGPSTMLPYTIVISVTSTSILVCDPDGVWANTPYPSTILKLPSQSSMEILTCIQNAEMAMRVIELPALRSDPYSTTNPSILTTDAQGMADIPTDMNWPILFFQDTQPSNQPAGATNVGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGGRYVFSPNPGQNVTIKAYYQRSYKLLFSPTNNNLDPIVQNNEALASFPEGYLYSTLSAYYDKNKNTDEAQKWKSRFDDAYGLIEDQNFKDKWRGGDQHLTSEFQPRNYRYSFK
Ga0209189_100008821	F001629	AGGAG	MNLNQGALAQALVDRILQDVYEFDKSLYMSTVIGVLEIVKQHLINESLEDCDD
Ga0209189_100008837	F040590	GAGG	MSAYGKVISGGKAMTSGLTKGINDKLKSFSESHKRSAMLATAVGKTFDQNPLSDPHHNDVNAAAKKSFTTPKLPSKV
Ga0209189_100008842	F004695	AGGA	MLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEYDSEQATQATEMVKYMVNSKNDSYAIIRDWAQDALLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPEEADQPNQQEEMDSAIKANTIYKAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTLHECKSQFPYIDIEKMSEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADKFSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDPNKHVFQFQPMQGNLAYVESSMQRFEADKMAMIGMTSPSDVLNPEAMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMNNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFTALLAQLDLSVPELFGKVRRPFEDTLRVLGVKDVDAYLPTIEEAAKVMQAKAAQGPSALDKETQSKTDLNNAKTQESQTVSALNMKKVEDIDTDNMFEALAAKRGKLSAVEI
Ga0209189_100008843	F003521	AGGA	MDSIETKSLVLNIRNYFNRRTKAADAHKDADVNRKTLVIENGNCASRLMKNEDFALMFNLYRFDLLSRLEECRTDPERIENAFNVAGVRDFIGFVEKTEYLGKVAQKINTSPKE
Ga0209189_100008852	F012214	AGGA	MADYTKLRTPFSNMSFTPDVPSNALGPNEYNSGRNVEADVRGVKKIYGEQSILSLIPYFPIFMEGGFRANGQFVYIVATRDTNNLGRWYMLTNNSIVNITPGYAANNNVTLPGYTDNINITTSWVGEVFFLNDGISAPMYFLPSRTEISRYDTAPDNYIWNYDIGVTKTTAAFMRNFCSPNVGNILVAGNLTKTSGGVTSVYETTIRWSQAFANTGVPASWVPTLSNVANEQEVPVRGQLVDGFFLGGNFYICSYWDTVILSPIAYQSTTTPVFGVRLFNQGRGLLNNNCWTNTDANVYGIDARDIWVFDGSNFNSLGNQKVKNYFFNNLSATYSDRVFMVNNTQKYQIEIYYPDLTSTGWCNKMLAYRYDLQVWNAPKDIQNACMGTEGPVFTGTDFKYASRCVTYAPTGAINAQLIQTDIGNSFINNQPIPALFERNNVVLQTENGPVPYSSKVYIHRALPEIAGTGEVQITVGGANSTAQNPTYGQTGRMNIVTDNPWVTTQQNAVRTVSLKMESNDATDQWNSTAMNWQATIIEDA
Ga0209189_100008862	F029042	N/A	MIDPITISAAFALAKSTIAGVQEAIQMGKDLQECSGDLIKFFEMRDTVEKAATEDKSKKPRSDMGQALDTVMQAKALRDAEKKLKEQLIYSGQGDVWEAIQAEYNLIIANRKREEREAEAAAKNRREKMAEMVETIFYGLAGCIVGGLICWGTFEFIVYKMKD
Ga0209189_100008895	F001915	AGG	MEWTLAHPLHDVDDIVEMADSVFGQEADGILTRDRNVFRKNVTIASTVQLFDKGREFLAVCRNWDEMKLLGYCWFDRGGYTTYANEEISNAKFHHVDLLLPAKTRVRLINQMIDQHILWAHTWNIPVICSTSIRAEHNAFMRIHQKRGFQTNGSYAWIRTENAIKDLK
Ga0209189_100008896	F012670	AGGA	MTTEKDAQIIFGDIRPEGSHVSSEELKEKKRQYYQMKKAEKKALALSTGQQPPKEPRPNMGTTIPNNGRPKSIVNRVTEYGALFNKLNDERASKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLQALRKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209189_1000088

Overview

Ecosystem & Geography

Associated Families

Sequences