Basic Information | |
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Taxon OID | 3300027746 Open in IMG/M |
Scaffold ID | Ga0209597_1075678 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1584 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000141 | Metagenome / Metatranscriptome | 1941 | Y |
F004279 | Metagenome / Metatranscriptome | 445 | Y |
F096866 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209597_10756784 | F000141 | N/A | VCLVIPGNRDITMKHAQFKCNGCKRDTEFLWLDELEIAEGYRAYQCMDCGCVGVKNIAEALHIPDSDICRCDKCGGWKFVTVDCHTCLLVSSK |
Ga0209597_10756785 | F004279 | AGGGGG | MGYVEMMDGSGFTLRLENDKKTLTPSYDLCIACNDDRLIHSGNYLVCVSCNTRQ |
Ga0209597_10756786 | F096866 | N/A | ALHLVDTQAKAVANESDPVVWSVGESVVQIGEVASVGFTCKHGDMVKKEGIAKATNKPYAGYVCSAPKADACDAKWAKLTAAGTWYWPDDAEQGKGGQ |
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