Scaffold Ga0209597_1045728

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1045728
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2199
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009604	Metagenome / Metatranscriptome	315	Y
F010397	Metagenome / Metatranscriptome	304	Y
F045085	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10457283	F009604	N/A	MITCGCGNEIHAERFGLGYKVCLNCGDKAALKNKKYGYMHFGHKTAGSIVVTSKKAVENYKKVSKRMNKGSNMGYASRLSTSF
Ga0209597_10457286	F045085	N/A	MNKLYKVIDLTVGLVFGSIFAIGIILVITIFFAVLIPSIFYFTVREVLKQLTKK
Ga0209597_10457288	F010397	AGGA	MNPSEFERTKPTITMKKINDLIKLIDEERVKTDILYKDRSRSLGDIKNLLLDMKDSFKKG