NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1001492

Scaffold Ga0209597_1001492


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1001492 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15230
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (19.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021090Metagenome220Y
F031094Metagenome183Y
F031097Metagenome / Metatranscriptome183Y
F038238Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100149214F038238N/AMKLDYQGKQLKLHKRATCLLELLKKAQAEQSRQEKLLAEWRAAGNYDNIRLFTHENNYLIRLAELNDIQKRILKSYYWLIVELYSISENFLLPINVIE
Ga0209597_100149216F031094AGGMRLLNAYFKTTIMKTVISYNNNFYPYNFLFVPMGGDNIFLDYEIDGSKFFLVKFRTIDVANNQIILSIVKL
Ga0209597_100149223F031097N/AMTQEEISNQLAANQSKSGLVEKLVFVLLPICVSAIGWLLTQVSTLNNQITVLNNKVAVVVTAENKAIPPQGTTIEMEAIRSAAAQSRADMKMEIVERMTNIKESAATERAEIKQRLAVLEYKNKLK
Ga0209597_100149227F021090N/AMITINNDQLKELEAFINQIPTAYGLPLIQFLGKLNAEQNPPVEEVTEA

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