NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1000393

Scaffold Ga0209597_1000393


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1000393 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29073
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (18.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012871Metagenome / Metatranscriptome276N
F019140Metagenome / Metatranscriptome231N
F021113Metagenome / Metatranscriptome220Y
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F045753Metagenome / Metatranscriptome152Y
F071242Metagenome / Metatranscriptome122Y
F091602Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_10003931F028175N/AMAITIEDQPYQYTPVGQRLMLVASSDNVANAGFRFVFDFGSFQVNVQPNASNKGMLDLAPIFREQLQHDAGASNEGINHEYSSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNGRYGLNGINKYLLSERTTDTHKWSEAPARGLSTDWVYIPTRLADFGQLYSLSNNGLLVDNDATDLFVSTYDNSNTLIEQTNYTLFTDTNSVNRLGAYPQNLINDGADFTNVKYYTIQAGTPIALPIYTPYSRVYCFYIVADDCRFDNVRLGWTNTCGGTDYFNFTKKSELSFNYDRKQYQKVVGSYNTASFTFNAWDRGTTDRYVTTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDATMTPVLVDTQNFVIKD
Ga0209597_10003932F036240N/AMANEQSAPNFFAVVNDMAKRFVELMQSDYRLKRKVGKNYTNAVASGTLEKSLKYRLQIKGQNINISIYAKGKASQYFLARENGRKAGKQPPIDAILDWMRIKPIKLRDKQSGKFQKPTEALKRQVAFLIARKIGKEGIKGWHAFDYAMDNIWDEYKAKITDAYGKDFGASLEGLNDI
Ga0209597_100039321F045753N/AMYCPKITYCFSDEDISALNERIKAIANNYNDDQTGWFEVDQEQNLVFIDDLDNMYTISLRGRFWKNDDPEFDLDYVTLEKDGVSFSFDVNIFDDHI
Ga0209597_100039326F091602N/AMKSELIFCPNCESKELGERVDEVLRDQQLEDWDTAYEHVDDEGEIKTCFDCQEWDDADDDAKGEGWD
Ga0209597_100039330F012871GGAMLRNASTTTLTTTQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEQNKQLKEKEMAINDDSWRRMFAEDLHNFKKGKYTVIEIRAVSLMRWLEESKIINADTFTEEEYRLCKENAKKNIYFEQQLVQSMVERMSDRKRQLLKESIRFEGMRELYKLYLSKQ
Ga0209597_100039333F019140N/AMKNIPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKPNEDGREQN
Ga0209597_100039335F021113AGGAMNRNILAALLLFIGTSILWLVLCWNWWGCTRKKNVQENVQKQDSIINYNAGEYDRLLTEQIELYKQLRTYEDAQLTAKTTYQRTRSAIIIRDTITIVDVIHLVNSCDSVIASDSLVINNLKKQINIEEQKIDNLQEVVVAYEQKENILTEEINTLNADKKKLEKQKKRRNHALVVTSSVAILSTFVLSILL
Ga0209597_100039349F071242N/AMINMENKSGAMVACLEFIKLNIKSQSEFGRIANGKRKLEMWKHYAWKVTRISVNVAIWIFILYKLLS

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