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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027746 Open in IMG/M |
| Scaffold ID | Ga0209597_1000393 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29073 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (18.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012871 | Metagenome / Metatranscriptome | 276 | N |
| F019140 | Metagenome / Metatranscriptome | 231 | N |
| F021113 | Metagenome / Metatranscriptome | 220 | Y |
| F028175 | Metagenome / Metatranscriptome | 192 | Y |
| F036240 | Metagenome / Metatranscriptome | 170 | N |
| F045753 | Metagenome / Metatranscriptome | 152 | Y |
| F071242 | Metagenome / Metatranscriptome | 122 | Y |
| F091602 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209597_10003931 | F028175 | N/A | MAITIEDQPYQYTPVGQRLMLVASSDNVANAGFRFVFDFGSFQVNVQPNASNKGMLDLAPIFREQLQHDAGASNEGINHEYSSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNGRYGLNGINKYLLSERTTDTHKWSEAPARGLSTDWVYIPTRLADFGQLYSLSNNGLLVDNDATDLFVSTYDNSNTLIEQTNYTLFTDTNSVNRLGAYPQNLINDGADFTNVKYYTIQAGTPIALPIYTPYSRVYCFYIVADDCRFDNVRLGWTNTCGGTDYFNFTKKSELSFNYDRKQYQKVVGSYNTASFTFNAWDRGTTDRYVTTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDATMTPVLVDTQNFVIKD |
| Ga0209597_10003932 | F036240 | N/A | MANEQSAPNFFAVVNDMAKRFVELMQSDYRLKRKVGKNYTNAVASGTLEKSLKYRLQIKGQNINISIYAKGKASQYFLARENGRKAGKQPPIDAILDWMRIKPIKLRDKQSGKFQKPTEALKRQVAFLIARKIGKEGIKGWHAFDYAMDNIWDEYKAKITDAYGKDFGASLEGLNDI |
| Ga0209597_100039321 | F045753 | N/A | MYCPKITYCFSDEDISALNERIKAIANNYNDDQTGWFEVDQEQNLVFIDDLDNMYTISLRGRFWKNDDPEFDLDYVTLEKDGVSFSFDVNIFDDHI |
| Ga0209597_100039326 | F091602 | N/A | MKSELIFCPNCESKELGERVDEVLRDQQLEDWDTAYEHVDDEGEIKTCFDCQEWDDADDDAKGEGWD |
| Ga0209597_100039330 | F012871 | GGA | MLRNASTTTLTTTQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEQNKQLKEKEMAINDDSWRRMFAEDLHNFKKGKYTVIEIRAVSLMRWLEESKIINADTFTEEEYRLCKENAKKNIYFEQQLVQSMVERMSDRKRQLLKESIRFEGMRELYKLYLSKQ |
| Ga0209597_100039333 | F019140 | N/A | MKNIPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKPNEDGREQN |
| Ga0209597_100039335 | F021113 | AGGA | MNRNILAALLLFIGTSILWLVLCWNWWGCTRKKNVQENVQKQDSIINYNAGEYDRLLTEQIELYKQLRTYEDAQLTAKTTYQRTRSAIIIRDTITIVDVIHLVNSCDSVIASDSLVINNLKKQINIEEQKIDNLQEVVVAYEQKENILTEEINTLNADKKKLEKQKKRRNHALVVTSSVAILSTFVLSILL |
| Ga0209597_100039349 | F071242 | N/A | MINMENKSGAMVACLEFIKLNIKSQSEFGRIANGKRKLEMWKHYAWKVTRISVNVAIWIFILYKLLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |