Scaffold Ga0209597_1000317

Overview

Basic Information

• Taxon OID: 3300027746
• Scaffold ID: Ga0209597_1000317
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32252
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (76.79%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003112	Metagenome / Metatranscriptome	506	N
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F007467	Metagenome / Metatranscriptome	350	Y
F008071	Metagenome	339	Y
F020886	Metagenome / Metatranscriptome	221	N
F024501	Metagenome	205	Y
F065527	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100031711	F003304	GGA	MRKALVTQAFGDEWKKILELTKPRMEAYCKRHQIDFISLEKPLAEPVQYSKSAIGNIMATKGYEQVTFLDADVLVAADCPDIGEDAGVFCAFDEGAYLDRKLAMGKLAGTFGAIIDPRFYVNTGVFVISSKVVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYKDAMCIHYAGQSADLAKLAELIKADEAELVAVGR
Ga0209597_100031718	F002826	N/A	MTVDTKARLKWSRDILLTAREKLVVEKNRADRGRSVDIIQIITMVDAAALIAKEILESE
Ga0209597_10003172	F065527	GAG	MKAITMIAVTAMLMASVMAEDDDEGVGIGDFAGGVLGKSVIITGRNTAVTSDGKFICSNRRGFATSDGYYGSNGNQVFGNGKLVVKSKSFFYGSSSSWKNGNSYYDGKKGSWITSNPRAS
Ga0209597_100031725	F003962	GGA	MAHKFITLLQQENAKLHGVVRLLGGLVDDMEANCSYEVFEAQWEGLTTYVKGLSEFFCTHQKALQSLQEACPAVWDQDEVDET
Ga0209597_100031727	F024501	AGGA	MKHPEQLDDVGITESYLRKMAKKEGVSYKKVVQIAMEQWGEYSLKLINKMVAEDIKTR
Ga0209597_100031738	F001459	AGG	MGYKAMRKLKAALAFIRDQEWINEPKWVDEDEKAWTGFLSTPTGKKLSLILLNLTLRQNASAVMKKHDVLADACGYAKGFRGCVATLESLASQKLNSAVSGYGDGSDEPVAE
Ga0209597_10003174	F007467	GGCGG	VTDKEAWAKFEDGLKDVTSMEEALAWVKKNQPIVEKLTIRAMIRNFNDDISRANKSWRN
Ga0209597_100031748	F003112	GAG	VMTRAEYTCFKEALKFAAENNNMVKETKYVGKVKHLLSVNRSIKRIVDDGRNRDEVTDAVVHLAVALRYLEGKGRES
Ga0209597_100031749	F020886	GGAGG	VSLDEVADLRDRVANVSERLARMEERQMTLYSMIERSLAFHGDTANRLSALETLKTKVLAVAGVVGLACSMAWDVLKNRFN
Ga0209597_100031752	F000635	AGCAGG	MTLTEIAQYAGEKVGKTDSDTITFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTSRTITLGTNVETPLSVAYNDSEVDPIDLATIISQDPSLLDDARTGDPSTYHFTGRNTGGVAELNLYPRMATSGTIPLRVIEKLKCLTRANYIVDFPPSDDALTDELRLPHVHHLVLALTHSDALERERQYTKAQVITQSANSDLSAMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0209597_100031754	F008071	GAGG	MTAMEYVELSGVPESRWPIFREWFSWYNQRGMVGVAKDGEEIVGVAVARVINASEEPTHYLHRPNGDTAFVDLTVTSTDGRSTARSRRAMQCLLTILLDRFGPRRSLIFNRNGVKKRYDYMKFMKKAMA