Scaffold Ga0209908_10003799

Overview

Basic Information

• Taxon OID: 3300027745
• Scaffold ID: Ga0209908_10003799
• Source Dataset Name: Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2116
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost → Thawing Permafrost Microbial Communities From The Arctic, Studying Carbon Transformations

Source Dataset Sampling Location

• Location Name: Sweden: Kiruna
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209908_100037991	F003337	N/A	DEMCIRDSNGGVWVNGTEVADSTTVFPGDVLETKPGFVANLDAEGSSVLIQGESIVKFQGNSLTLEHGKVSVGTSTAMNVNVNCLKVEPISNERTQYDVTDVSGKVEVAANKNDVKITLTGALRKASSESGSSDSATVHEGQRATRDESTACGVAPRPGGASTTPLNTKWLEIGGGAGAGVLVLCLLLCKGSGPSNVSPSQP
Ga0209908_100037992	F004095	AGGAG	MSAINGDKARFNRRRRQKISRRQSNEKMLKALAEKHLVAPAAPANLKEKMA
Ga0209908_100037993	F002101	AGGAG	MTMPVLSLPLPSPDGSPVKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLISVAGEADSRDKFCTDMRSASPPQRIAFFVGGPEYLAAAPHSDAGPAEADADALHKEMVAALLAQAASDSSHQRWGILEACKRISSVRSVSEARSRAVRETPRPSRWEEAIERYSAPEAINPQPLFTTASAPPLSTAETEREELL