Scaffold Ga0209355_1007355

Overview

Basic Information

• Taxon OID: 3300027744
• Scaffold ID: Ga0209355_1007355
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5861
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055719	Metagenome / Metatranscriptome	138	N
F097200	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209355_100735511	F055719	N/A	MNKMLQKIVTKYPWKCVDVSVYHNKANANKMLQQILTKWTGSNKTNKIKITNQF
Ga0209355_10073556	F097200	N/A	MTSNLASLKKLQGHNREQLFKSLYETNHSDCVVEVIKTRRKPDVCIKRNGVVVHNISVKSADKVIQWELKSYNKLLSLYDNSHLIMEFMNIRTQNDKPTQKQLFVDYFPRVIAYLSDKHNFKQFITKHFTNNNEVDLLAVGNGINYNIYNFQQILDYMADNYVVRNSEQQVQINTTNGYLMFSIEIRSDKKAMLIRQDVTSLQRILKHITPVDIVPXIX