Scaffold Ga0209593_10017253

Overview

Basic Information

• Taxon OID: 3300027743
• Scaffold ID: Ga0209593_10017253
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2936
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013869	Metagenome / Metatranscriptome	267	Y
F021438	Metagenome / Metatranscriptome	219	Y
F064480	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209593_100172532	F013869	GGAGG	MTIAKVLAVYKTSPLVLVVESAEGTVLELSLTDLRGAGHRLSDGACRSLVEDYQMFTCQPALG
Ga0209593_100172534	F021438	AGGAGG	MNAVKTPTQLRLTQDLLERADAMIAVMAADPEVRALGMPTRTAVLRLAIARGLRDLERQYQPTADASAPHPITPPYDVTPPSREGTLSHVYAGRDGEDQEPRARRNGAGVSTPASKGS
Ga0209593_100172536	F064480	AGGAG	MSSTTDHVHEGHDQTAPASPDTWGPDGTMDAPPETEASFEE