Scaffold Ga0209085_1092695

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1092695
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1339
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F005558	Metagenome	396	Y
F031792	Metagenome	181	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10926951	F005558	N/A	MNDSISWAELAELTHATQVEKFGFCTCEDNQEGENPYQDCPKEKV
Ga0209085_10926952	F031792	AGGAG	MSYEPDWNDPVFYAEEFEPAVKCFQCSDTLDRDDVVWADNEGQIGEKEGNDTAWCVACLPSEKGETNE
Ga0209085_10926953	F000821	GGAG	MNDEYLQAKFNLCLNEAEKNIKEQDVANAIKNLERANRAMARIFNLEEEEENE
Ga0209085_10926954	F001477	GAGG	MNDGRVLRILNNGLKFMGDSNIYTIHPPKSDLILFYEVLTPDGENEWGGADAGQAIQWLSHAPVGSRILVSAWDSDEEDAHLVGQTLDISEIVKAASL
Ga0209085_10926955	F044984	GGAGG	MDDEAKRRLATAGRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANSVPDVAGRTDYESTDESYNGGEA