Scaffold Ga0209085_1016672

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1016672
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3584
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025480	Metagenome	201	Y
F033799	Metagenome	176	Y
F088873	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10166721	F025480	N/A	KRGVYCCQSCANRDRTEYSPKVAEAMRKVAIEYNRTPEAIAQQRLLSTGITIEDFAIDIPEIKDLSDYSEFLDGFDRGEKW
Ga0209085_101667211	F033799	N/A	MNRNFIVVCTECSEEHSTEDVEFSNVEENPQGWDIMYFICPITKMEARSLVYAE
Ga0209085_10166728	F088873	AGGA	MYYGMFTTEGNQKVAAIVEFAKTNGAEWENVLPMLNNLALSNPMYREANDTVVRELVYDACGFTSDFYI