Scaffold Ga0209085_1015032

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1015032
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3802
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013503	Metagenome	270	Y
F029367	Metagenome	188	N
F034802	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10150323	F034802	GGAG	VNKKEAHELLDARRRGLSVLPQAIDTALFLTGDLGGNALVFSEGMDKSLQQESPKCWQSKGNNMVAGTGRYYGSEEWFRANHGFKEANE
Ga0209085_10150325	F013503	GAGG	MSLSNFKSNVKQESGFDEMQRLMCSVLGCGKRWSVLLDGDKPKCSQHQWGKETTTYSHPTIEKSVTQTVQQWYEKEEF
Ga0209085_10150327	F029367	AGGAG	MKPEHSEFDCMVCEHPDAQSVDLECYFEPNTTNLWFVYIGDALITDLLRDTVIQSLERGYAKAIQEQIDNDKLDYALARYESKHYEV