Basic Information | |
---|---|
Taxon OID | 3300027741 Open in IMG/M |
Scaffold ID | Ga0209085_1015032 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3802 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013503 | Metagenome | 270 | Y |
F029367 | Metagenome | 188 | N |
F034802 | Metagenome | 173 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209085_10150323 | F034802 | GGAG | VNKKEAHELLDARRRGLSVLPQAIDTALFLTGDLGGNALVFSEGMDKSLQQESPKCWQSKGNNMVAGTGRYYGSEEWFRANHGFKEANE |
Ga0209085_10150325 | F013503 | GAGG | MSLSNFKSNVKQESGFDEMQRLMCSVLGCGKRWSVLLDGDKPKCSQHQWGKETTTYSHPTIEKSVTQTVQQWYEKEEF |
Ga0209085_10150327 | F029367 | AGGAG | MKPEHSEFDCMVCEHPDAQSVDLECYFEPNTTNLWFVYIGDALITDLLRDTVIQSLERGYAKAIQEQIDNDKLDYALARYESKHYEV |
⦗Top⦘ |