Scaffold Ga0209085_1012969

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1012969
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4126
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041150	Metagenome / Metatranscriptome	160	Y
F043902	Metagenome / Metatranscriptome	155	Y
F054798	Metagenome / Metatranscriptome	139	N
F085623	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_101296910	F085623	N/A	MTKLRTIILEYDLIEIHHNKKLKNKPYLVRVYSYNNSDPHELRLNEDDLKNLYSILKEYKYL
Ga0209085_10129692	F054798	AGGAGG	MIYLYLNETEKLAAIVAELVKLKMGVVAELHGNKWHIEVTQ
Ga0209085_10129696	F041150	GGAG	MGMGNFAVGSFVIEYDDLKKICPEEIKSIEKAKYFNDIGWGTIGQWLSWDDPDQIKDAFYDAILEDESKPDIRLELNVDQIVEDIFQEYEKLIVALKNTFNKKTGLTLYFDHYDEEGGDRYDNPGDKDGCIFCVGGMVQLTPAGEKFKDVISERKWTQFG
Ga0209085_10129699	F043902	GGAG	MTVQQLRNDGYKVRVLHNRLYNGYHAWQNGSRIHTDGITEPDTKGGSTQIIIDSPDGKHFRGLAICSKKENYNKKMGVKIALGRSGVISKIYDQTTNHNS