Scaffold Ga0209085_1009068

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1009068
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5041
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F022157	Metagenome	215	Y
F043818	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100906813	F022157	GGAGG	MWDVSVTFILMFFGAFTMIFWGALLIWVLYLLQNEADND
Ga0209085_10090687	F015970	AGGAG	MTKDFDKAKWECYQGLNDEDIMDAIQGSEAIPLAIKSGDWDIAFQFIKDRIDNKMQIRAEFYLTNDRTTPYIDDDDEMRTLRTLWLKKEYEVTK
Ga0209085_10090688	F043818	GAGG	MKMKNSIGQIIEESQDEFFCQFCTMPKVASTPICSCSGSWFKLRDFDFDTQFSIAQTIFNKHKKGIADKETD