Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1003883 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1003883 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8109
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8109

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (64.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F004760	Metagenome / Metatranscriptome	424	N
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100388310	F000635	N/A	MTLTEIAQYAGEKIGKTDADMLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLKTSGTIPLRVVEKLKCLTRTNYIVDFPPSDSALNDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0209085_100388312	F002149	GAG	MTAIEYIEQSGVPESMWHNLAEWFGWFEKQGMVGIVRDNEGIAGVALARCIKDGQEPVHYVHSEDGQNVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
Ga0209085_10038832	F004760	N/A	MPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRKKYGK
Ga0209085_10038833	F010603	AGGAG	MANEFVRSQRKAKGKAIRFDTQSQTNVFEITAASSGGTVNTVATSPASLNVTLNGTSYRIALHT
Ga0209085_10038834	F012569	N/A	MSRALDKFQAQYGFSVGTQGTATGGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG
Ga0209085_10038837	F010449	GGGGG	MSEEQVWNMEVRLARMEERQLQLYSMVERSLAFHGDVANRLGALETLKTKVLAVAGVVGLACSMAWDVLKNRFNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1003883

Overview

Ecosystem & Geography

Associated Families

Sequences