Scaffold Ga0209085_1003340

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1003340
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8825
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F013404	Metagenome	271	Y
F083631	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100334028	F013404	AGGAG	MIDIKLENAIQKLDDTFIKQKSIANQLVTEHRKLQQALANMLVNADEDCPKQYRTEHFCRAIDDGYSLLKTIGYFRKRVK
Ga0209085_100334029	F003803	AGGA	MTKNKTLLRFRIYDGDREYTDYAIIDKKQRTAFDDKEIISKFFYDNDVSKEQFLSDGRAVRIESEIPITDTDARKLESLSMAFLHDFKLKELVQ
Ga0209085_100334032	F083631	AGGAG	MKKPTLNLVPATEDENVYQHHFLPEGIFTTSWEDVKNIKDYIKTFNDRKLREEYRLYTSIQRPTILENYFKDFIKQEISTRGIGV