NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1003007

Scaffold Ga0209085_1003007


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1003007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9376
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040987Metagenome160N
F042707Metagenome157N
F067353Metagenome125N
F096503Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100300713F040987N/AMQSTTLQRGAEERKVTLYENGDSYLITVTVLQSLFHEVGHTETLYTPKSEAQAEFLFGSAVRFLQGFQYIVTDGVLA
Ga0209085_100300715F067353AGGMSKNAERMIRDKNRAMNTLNALNETLINDLVRRASVRATVDQSPDEGAKSKGGISNPTLNAVVRTMSGKRVADPIYDSVKELAVMLSNISELAQRIDERVAFITDTKSSIKELVVVYCEACQREVAGTVSDRIRSGYCQACYQAWRREGMPSRYQFELQRREELAESLEN
Ga0209085_100300720F096503AGGAGGMFKLSYRTGRKLVWGTAAIVFMYVDLTAEGGISFWATVYGLGTAVVAATFLALISK
Ga0209085_10030078F042707GGAVTKWYNLPARELIPPMTQKGILDEIEIIEDLVDQMNEAGQQAAICEATYKALYAQTRLTIRALTKTKLTVDEVEADATVQCEEAHLAYLIAQNRLITTREALRAAQSRLDAWRSLSAGFRSAGG

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