Scaffold Ga0209085_1003007

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1003007
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9376
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040987	Metagenome	160	N
F042707	Metagenome	157	N
F067353	Metagenome	125	N
F096503	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100300713	F040987	N/A	MQSTTLQRGAEERKVTLYENGDSYLITVTVLQSLFHEVGHTETLYTPKSEAQAEFLFGSAVRFLQGFQYIVTDGVLA
Ga0209085_100300715	F067353	AGG	MSKNAERMIRDKNRAMNTLNALNETLINDLVRRASVRATVDQSPDEGAKSKGGISNPTLNAVVRTMSGKRVADPIYDSVKELAVMLSNISELAQRIDERVAFITDTKSSIKELVVVYCEACQREVAGTVSDRIRSGYCQACYQAWRREGMPSRYQFELQRREELAESLEN
Ga0209085_100300720	F096503	AGGAGG	MFKLSYRTGRKLVWGTAAIVFMYVDLTAEGGISFWATVYGLGTAVVAATFLALISK
Ga0209085_10030078	F042707	GGA	VTKWYNLPARELIPPMTQKGILDEIEIIEDLVDQMNEAGQQAAICEATYKALYAQTRLTIRALTKTKLTVDEVEADATVQCEEAHLAYLIAQNRLITTREALRAAQSRLDAWRSLSAGFRSAGG