NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209085_1002019

Scaffold Ga0209085_1002019


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1002019 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11860
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (25.93%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020696Metagenome / Metatranscriptome222Y
F020908Metagenome / Metatranscriptome221Y
F042902Metagenome / Metatranscriptome157Y
F087193Metagenome / Metatranscriptome110Y
F097352Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100201912F020908N/AMFKKFFKYTPTPQEQQFIEIVNKLLLHPKTSLRMTPLTDKYFLINEQKHYYVLLKENGIQITNSKFSFAKSIHPKAYDMIIETIHTHMEENRQTLENKLFKNETDTLDAVLNSL
Ga0209085_100201914F097352AGGMNGLKQLKRNKMKQFLASTIVNGNEIRLVKERGGYFIHWGEENRTKAVQELLTPSGRKPSQNSAHKKFLEAVKATQYLKFSKL
Ga0209085_100201920F020696N/AMKNKLETCHHCGEQKEDCYHGFIAMTIPILEAEAKIEKWGRKDWWKNLEREDLTEEEMKELDGLATYDQLLSTVGRGVQCEDCGRKEAELYEKYYPKSLES
Ga0209085_100201925F087193GAGMAVEKATEFDTLRVLHTLWKSRKLETAVVKRLLKEEFDLDLTVLANGEISAQSPDGKSKYSIK
Ga0209085_100201926F042902N/AMTLKDLIDLAGDRELSKSYPKADRVYIWDYKTQFNSDFELELVLIPSDSGKAGFKDKVSVQELLDYVLDQIDPKAPADEIISQMKIVDVEGITIAKV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.