Scaffold Ga0209085_1001871

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1001871
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12500
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013732	Metagenome / Metatranscriptome	268	Y
F024467	Metagenome	205	Y
F093146	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100187114	F024467	GAG	MADFNSTENQDWNITLDLGIIAEDLAKDPAFIAAISKEVRNQMTKDVRWMGNLFAKWASTNPPAKPTRNRSQ
Ga0209085_100187117	F013732	N/A	DEISERTARSISRAYMKAAGSAAKLTNLGFDEAKPETWTVFADISDEDRDALDGYQAALIVGLVKSWSYGDLPTNDSALDLPKPVFEALAEACATEFNSTTDFSPDIDPKAPTAD
Ga0209085_10018713	F093146	AGGAG	MYPTEIPSGAKTVTTHEGWELSYSVDTTAPFAINAWNVTSPYPTNEPFWHQPHDLDGADWADEATAQAFADKWVDDNFVTPPAPTE