Scaffold Ga0209085_1001235

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1001235
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16261
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056554	Metagenome / Metatranscriptome	137	Y
F070923	Metagenome	122	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100123523	F098561	AGGA	MAITLGKDCRISIGGTVSGVRNVTLTETARTIDINPFGSREASVYQTGYDCSVSVELNDSEALGDAFSNMHTGTPVQVSGGAGGFNFLAVITGISENDPIDGVATFTIDAKMTDRSLTRGGA
Ga0209085_100123524	F056554	AGGA	MAITLGKDATGAPFGAGIISATFTQECETIDISNRTNIGGSSGAPGKKAFKAGFVTKTWEIECHDPTGLITSLEAAGTSGSFSVMSVTENISVDGAVTYNVTAKEF
Ga0209085_10012356	F102439	N/A	MSEVQRSFVDDDLPPAKGKRRRMPERLSPPMRKFLTKLARIGARVTWTIELLYDPSKGGQGELTDRAKAGDHTLVLDTVREVEYRASQLGDDIEAFMTPPDKLPGEPGEPVRVDAMARRQAKKQHLFD
Ga0209085_10012357	F070923	GGAGG	VGDAPGGMLPHLRSRLRQEIGPRAVNAGRAFDEFVDAICRCWNAEHWTKLARTQPESQSAAIQDAKVVIAKVREDVEAMWGDSEQLRSLYSSVGEHTVAVFARLWFESMSNRTWMRQACREARRT