Basic Information | |
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Taxon OID | 3300027741 Open in IMG/M |
Scaffold ID | Ga0209085_1001235 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16261 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (88.46%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F056554 | Metagenome / Metatranscriptome | 137 | Y |
F070923 | Metagenome | 122 | Y |
F098561 | Metagenome | 103 | Y |
F102439 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209085_100123523 | F098561 | AGGA | MAITLGKDCRISIGGTVSGVRNVTLTETARTIDINPFGSREASVYQTGYDCSVSVELNDSEALGDAFSNMHTGTPVQVSGGAGGFNFLAVITGISENDPIDGVATFTIDAKMTDRSLTRGGA |
Ga0209085_100123524 | F056554 | AGGA | MAITLGKDATGAPFGAGIISATFTQECETIDISNRTNIGGSSGAPGKKAFKAGFVTKTWEIECHDPTGLITSLEAAGTSGSFSVMSVTENISVDGAVTYNVTAKEF |
Ga0209085_10012356 | F102439 | N/A | MSEVQRSFVDDDLPPAKGKRRRMPERLSPPMRKFLTKLARIGARVTWTIELLYDPSKGGQGELTDRAKAGDHTLVLDTVREVEYRASQLGDDIEAFMTPPDKLPGEPGEPVRVDAMARRQAKKQHLFD |
Ga0209085_10012357 | F070923 | GGAGG | VGDAPGGMLPHLRSRLRQEIGPRAVNAGRAFDEFVDAICRCWNAEHWTKLARTQPESQSAAIQDAKVVIAKVREDVEAMWGDSEQLRSLYSSVGEHTVAVFARLWFESMSNRTWMRQACREARRT |
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