Scaffold Ga0209085_1000877

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000877
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20224
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012658	Metagenome / Metatranscriptome	278	Y
F054798	Metagenome / Metatranscriptome	139	N
F064189	Metagenome	129	Y
F074805	Metagenome / Metatranscriptome	119	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10008772	F064189	AGGAG	MAKSFRDLNTVEACNMNREQAMMYLINFFNSRMAAANKHNVSKAKELIGLHEVSVTELVNKYVELVLENS
Ga0209085_100087727	F012658	N/A	MFATAYKPVTNNLDKLFSAMRAGKYHCVLDPKGNAHVGLVNGIMREDGSGKNWIVTINSRLRNEQVFIHAS
Ga0209085_10008773	F104766	GAGG	MEWISFFERQPEDGQGIWYYGEYIGVWCGEYRYAPHDMVSPHLMICHESPGLVDRMDAPWWMLDDGKMDRPEKPSKDYPDDYPRLITVNGKEVWTTEGRMGFYEE
Ga0209085_10008774	F054798	GGAGG	MIYLNINEIERLAEIVAELVKLGMSVTAELRGTKWHIEVTK
Ga0209085_10008779	F074805	N/A	MEVVIGFQFERVSMNDVILFGSILSAVAAAVVGFVFYSVYGGSKASLANAQEGQVFNFVYEQPLHGTHERFLAKVIGKQTLTADQIKRLNRKSRYRINDPEFVRTTNLVTCRTADGKVRNFYAERVTKCRKPLLAGALFKSGFANLF