Basic Information | |
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Taxon OID | 3300027741 Open in IMG/M |
Scaffold ID | Ga0209085_1000518 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27920 |
Total Scaffold Genes | 74 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (82.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010540 | Metagenome / Metatranscriptome | 302 | Y |
F027400 | Metagenome / Metatranscriptome | 194 | Y |
F075663 | Metagenome / Metatranscriptome | 118 | Y |
F089841 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209085_100051814 | F010540 | GAGG | LKKIRVICNGVSFYTSKKAIRERRVGDFALQNDALSYALEQMGTNQGIGTTVRYYDHKMKQEVFNIQLSEV |
Ga0209085_100051816 | F027400 | AGG | MTNSELREKLEQAQALLADVYHWAEMPMSNGLQVSPLKTNAEIASQMSCADSCIIDALSELEDME |
Ga0209085_10005182 | F089841 | AGGAG | MNTIFFSKRHELRENYYIIPFSCSDLMNVNTEVSYRDRSESTQKVIQSVTDRIAKALLNNGYILQGVNFSSMSVSAIIDTKVSQR |
Ga0209085_10005183 | F075663 | GAGG | MTKNETIALIIESIVNEGYKDADAFVTYVTMILPMMSTEELQAELACLE |
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