Scaffold Ga0209085_1000518

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000518
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27920
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (82.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010540	Metagenome / Metatranscriptome	302	Y
F027400	Metagenome / Metatranscriptome	194	Y
F075663	Metagenome / Metatranscriptome	118	Y
F089841	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100051814	F010540	GAGG	LKKIRVICNGVSFYTSKKAIRERRVGDFALQNDALSYALEQMGTNQGIGTTVRYYDHKMKQEVFNIQLSEV
Ga0209085_100051816	F027400	AGG	MTNSELREKLEQAQALLADVYHWAEMPMSNGLQVSPLKTNAEIASQMSCADSCIIDALSELEDME
Ga0209085_10005182	F089841	AGGAG	MNTIFFSKRHELRENYYIIPFSCSDLMNVNTEVSYRDRSESTQKVIQSVTDRIAKALLNNGYILQGVNFSSMSVSAIIDTKVSQR
Ga0209085_10005183	F075663	GAGG	MTKNETIALIIESIVNEGYKDADAFVTYVTMILPMMSTEELQAELACLE