NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000425

Scaffold Ga0209085_1000425


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000425 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31114
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (57.69%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Associated Families17

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F005702Metagenome392Y
F005846Metagenome388Y
F006138Metagenome / Metatranscriptome380Y
F008938Metagenome325Y
F009142Metagenome322Y
F010463Metagenome303N
F011284Metagenome292N
F012113Metagenome / Metatranscriptome283Y
F012433Metagenome / Metatranscriptome280N
F014487Metagenome / Metatranscriptome262Y
F019290Metagenome230Y
F023059Metagenome211Y
F023833Metagenome208Y
F024265Metagenome206N
F025225Metagenome202Y
F090073Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100042516F005584GAGMAGTISTSYFETDLSYMIQDLYQSVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASSISAPTIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT
Ga0209085_100042518F009142N/AMNNSVQINVEDALASLLSGISELNVYKTNKVGAKLFPYATISASISGQVLGNYTGVYEVDVSINYSDTAAKISQANFDAKYCSIFEAFYSETPTLFTKIQNNIVDTKVYTARIVGQNPTIKTAKRAWQRGLKMSLVCTPQ
Ga0209085_100042519F014487N/AMPILLIALLLGSCSPRHTDNNALPRYSDMSAAEDAGRVKSQ
Ga0209085_10004252F008938N/AMITQKELREKWGIDAGQLSRMVKRGMPLTSESDAQRWRLANQKRVSKSQIARTPSLTSSEPLKDSDAESYKSKTSLGRLNRAKQAEVVAYSLVATAANNQNPVAMRAAVQGWGEAKKRVAEAEMEHARFEEVTRVLVRMDEVREVFGKWLGAIRNLMDAMPSSLAARANPSDPECAKRAIQEGIDQIFVTIQKAEGAFK
Ga0209085_100042521F012433AGAAGGMSSDQVADLRERLARIEERQVNLIAVLERHTSEIAEWTGRMNGKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVLSR
Ga0209085_100042522F006138GAGGMPATTIGNAGLVFGLNTETIGLVQSFSETRNIEKNEIRNSTGDISAVGYYNPTTAYSLSVAITGANTSLTVGGAFASLANATTVGTCRIDSIALSKTNTGFVTLDISATGYPNVS
Ga0209085_100042523F019290N/AMEGSSYWGTTNIKVASAVAAFGGTLRQSDPVTHIVREDGSKQITFWFNSGGSGSMAKKEMEAKWSEMTSDGEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPTNAKPELKRAILKAI
Ga0209085_100042524F090073AGGMSDILDEELNASFVQPHKSFKGEQIAEYTEGSRLLMLQCKDKNDSSVYFVWSFLYLHLLLHKNKREAIKLAWDKDTFRERVLDWVADKTDEDRDIATNIVSTIIEDAGKARVSIVQSGIEGQASGNE
Ga0209085_100042525F025225AGGMIEIDLLNQAKFIHKLQQYQQVSKKNMADVINSKLGDVAVTAIGTTYRTNAAQIASELQRVEGKVVTKKVFKPFGLTKSGKIKKRKIGEYVVGYKAQSVSYAGTYKLVNWLLKNRGLPTLGKTKLGVGGLGMGTKPGTIGALARRLVAGRKRSINYIRNGWAAAAAVFGKRENLTRGDYSKESIKRLGGGTKADSEKAQMEGIIFNRAGDLDTRYYPVRKRAISGAAKVGMPGLLMAIDKVMKDMNVYLARKNKEESDKLGL
Ga0209085_100042532F012113N/AMNQILTFVQSQDVFAWVGALVALLSAVIAIASLIPGDEPEATLTKVVSFLSRFSRK
Ga0209085_100042533F023059AGGAMWEAILASLAGLIGIVAWWTKNRAKTKKERDDEEIAYNRRLRDSEVDAWIHRR
Ga0209085_100042535F011284AGCAGMTSTQGVEKTTQKHFTKKHELHMTTLQMAAVESMEKKYKRGVEENQGTKLWEMPSVRLVENAIEEATDQLTYLLTLRSQMHVVLELARDGCTDETLTNPRARECCNLIYTTLTGQTKTPL
Ga0209085_100042539F005846AGTAGGVPASHDEFSDGFSIEGKLNGWRGWFDQETKQGYNRHGQFASNHNLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVVWEGFVMKALNDGKYPFITHPSYCSHAWQKQRIRS
Ga0209085_100042540F005702AGGAVIFGLLVFIGLVILQGVRLFAKHIDQQNYERRRFYLSVAADLDRLDKIIAEGNKPKQPELVLPSKNWVGRN
Ga0209085_100042544F023833AGGAMKSHSEQVQDIINDAMRKAATLERERCAELVQRLSDGTEDQVIKEILNEVVTAIRRLSDV
Ga0209085_100042548F010463AGGCGGVNELVLAATIHRVKMCEDRIKEFEQMVTTLTAQMAHNRAELASKGLANLVMGTTTPLDIPKELVPTYGKYRARGNRTHAVVMKRWEIWKAQHESGLSLRDIARAWGCHPTSVLNAKNRKFKARKATGRNTK
Ga0209085_100042551F024265N/AMNEAYTTPDAKAKSILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKCE
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