Scaffold Ga0209085_1000320

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000320
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35858
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (62.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F008938	Metagenome	325	Y
F014488	Metagenome	262	Y
F019102	Metagenome	231	Y
F023059	Metagenome	211	Y
F025225	Metagenome	202	Y
F027777	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100032020	F014488	GAG	MKHQGQDPADSILASYTPDMAEAIDTLEDRVKERLAQMKAMNPAIDLNQLAKLTAEVVEQTIKCEGDSQMLRNKRDDTLDEALLALATNRSPDSLTAIAKRYINPTTGKPYTRAAISARLSELTQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNKDAWTKGIKSRKAK
Ga0209085_100032024	F008938	GGA	MSRLVKRGMPLTSEADAHRWRLANQKRVSRVQPILPPSTTSSETSETSDSESLKSENSLGRLIRAKRAELVAYSLVARASRDGNPVAMRAAIAGWGEAKKRASEAEMEHAQYEEATRAVIRMDEVREVFGKWLGSIRNLMDAMPASLSTRANPSDPECAKQAIQEGIDQIFVTIQKAEGAFK
Ga0209085_100032042	F005584	N/A	MSGTIDTTYFSTDLTYMIGDLWASVTGLGSSAVSASVTDLGTAQELDIGGDVIRITQSLVVKVSAISAPAIGQLCSVSGVERMIAGFSKAADDVSYTIELADITT
Ga0209085_100032049	F019102	N/A	MSISLEEELNSSFVSPEREFMGEKLAPYTEGSRLLLLQVRDDEDSSIYFIWAFIYMHIQIARNRKDAIKLAWNKDLFREKIIDFIEGKTESDRDAATKIVSAMVDEAQKGRVEVIQTHGLQDVGNA
Ga0209085_100032050	F025225	N/A	MLTISLLNQAKFVHKLQQYQQVSRKNMADVINSKLGDVAVTAIGTTYRTNTAQIASELQRIETKTKTKKVFKPIGFDSKGRLKKRKIGQFLVKESKSVAYSGTYKLVNWLLKNRGLPTLGKTKLGLGGLGMGNKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAIFGKRASLSRGDYSKAAIMRLGGGSKADSNKARMEGIIFNRAGDKDTRYYPVRKRQVSGAVKVGLPGLLEAIDKVMGDMAVYLARKNKEQSDKLGL
Ga0209085_100032057	F023059	GGA	MIASILAVIAGLVGIGGWWIKNRAKTRRERDDEQIAYRRSLRDAEVDAWIHRR
Ga0209085_10003207	F027777	GGA	MSQEELPTFWYEEPANKKRPDETTDQWIVRLFGPIPDTEFDSRNDFRSLNLPETKKENAEGFGVFDYKEKE