Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000315 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000315 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36077
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36077

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F004010	Metagenome / Metatranscriptome	457	Y
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100031510	F000635	N/A	MTLTEIAQFAGEKIGKTDSDTLTFLQKAAALNYRRVWNFAPWRETVTNSTYGITDITSRTVSLGTNVEAPLSVAWGDDELTPMDLATIISQDADLLDASRVGTPQAYYFKGRNASGIAEIDIYPALQSSSTTTLKVVEKLQSLTRSSYVVDFPPSSNALGDELRLPHVSHVVLALTHADALERERQYGKSQIVVQSANSDLAAMANYELSQVGGMKQITPASLGELGLEEII
Ga0209085_100031516	F010603	GGA	VPGAAKEIKNMANEFVRSTRKAKGKALRFDTQNQTNVFEITAASSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0209085_100031517	F004760	AGGAGG	MPVYQYLDTRKKSIVELEKSVAERDNVPKHLKRFTVPQRLALVGVGEPLDNPLGANKTNVMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD
Ga0209085_100031521	F001459	GGA	MRKLRAILAFIRHQEWVDEPKWDTEDERALTGFLGTLTGKKLSLILLNLTLRQNASAVEKNADSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGADEPAVN
Ga0209085_100031547	F004010	AGGAG	MPLGSNVSKNMHELALDNKKKGKARGAGGVPRSQKQMIAIALSAAGKSNKSPRKFKAKSG
Ga0209085_100031561	F002009	GGA	MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETGVDHLERALVRSLFVLAQIKKEITRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000315

Overview

Ecosystem & Geography

Associated Families

Sequences