Scaffold Ga0209085_1000169

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000169
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51383
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (16.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016038	Metagenome / Metatranscriptome	250	Y
F052418	Metagenome	142	Y
F096706	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100016923	F016038	N/A	MAADIDMLGPVPKSLIDFSSIPKNSFNSVFYGYNLKHVLDDILLCTFVDETEDGTNIMRNGIVVPMNTDTKAWRIGEVILAGPNVKYTKIGDYVCFPNNLGIPVANLDVDNYGTLKKGIFLNEQRIFGICSLRGNDNESVAAHIKKSSSKQRSRN
Ga0209085_100016924	F052418	GAGG	MKVSLPTLRSLLLNNVAEIKFFRRRLKIGASSTRRMLCTNSLTLLNSPEGRLALNYKRAIRYPKFDPTAKDLIITWDIFMQDYRCISMAACDLIQVIPAGKEFWNFFNEKLAGLSAPQKINFMNS
Ga0209085_100016944	F096706	N/A	MSKVYTAAATGKNVISIFDAERGILSYKINLGNVEIINGPVVTGERITVVIKDIQGKIFGKVYTLPRGILSYSFQIK