NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000127

Scaffold Ga0209085_1000127


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000127 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57033
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (72.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004641Metagenome / Metatranscriptome429Y
F019602Metagenome / Metatranscriptome228N
F022413Metagenome / Metatranscriptome214N
F030431Metagenome / Metatranscriptome185N
F100405Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209085_1000127102F030431AGGAMSEIEIQINEILDTTVMLCEEIAEQVGCPVEWVEKIVEKRWNDLLFSDADFMNGYDMAKENM
Ga0209085_1000127106F022413AGGAMLLAKPKLTNTLDAKQFETFAECQEYLEAYTDISMSLVEWIALGKILVAETMTTPEFYPKKVKGQIVMAKFDIEEFA
Ga0209085_1000127111F100405AGGAMTKSAQQYTKIFEVLQNAKAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKLAKVKAVKAPVVKAAKPVVAKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVADYEDRAFAEAYIRT
Ga0209085_1000127112F019602GGAMDDRAVIERYILEAWDKGLTGTDVINYVQYMSSVPVFEIEPVLQNLIVRMSE
Ga0209085_100012738F004641GAGGMAEKTAEQAHEKGAFIEKLLFALLPLLVGSVGYLIQALGSIQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLRQDLEKEIQKNRDAIMENRTHIAILEDRAGVTKKIGPMKEN
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