Scaffold Ga0209085_1000075

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000075
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68630
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (73.40%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071905	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100007512	F041564	N/A	MEYDPSNEEHREVMERLIEEGAAILDGIDEDGEPIYKFDMDVLEEVLPELHQVFMDDMDQVLIDLYKKGLIEISYDEDLNAEMSVSQEGKQALEDAGFNMDDFNNNDYEEEEF
Ga0209085_100007526	F042147	AGGA	MLANGTMKTIEDDQDIYISLTQLCEYFTQSAVNMQAEVEEADPKNKRYALGLLDMMHTIADEIVQLGKFEAQRRLINSPDDLLKMIDKNPFGKVE
Ga0209085_10000753	F064358	AGAAG	MQCFSCGKQKNQLNPKKSDIINGITLLMCQTCIDDKFEPRWVIILSGRQNGVDSVRDYIIKRRYVGKVINAEELIA
Ga0209085_100007538	F071905	GGA	MRSMKLYDSKAWVHKRYVLEKKTIREMAMEANCSHMTIQRVLQQHGFIKKPRKWTK
Ga0209085_100007542	F028168	AGGA	MTDKPVIELISELTEFNDMKTYMNDPDLDYALDLIIKLIAKPDVPSSKAPDLIVKMQALSAKFALMARYYTTFEKGGENAKKKNVYFTAEEAINKLVDALKYSAKYGA
Ga0209085_10000755	F028070	N/A	MAKKIRDVKVPVKGLILDVRARPNYLALTVYESNIMEYSENQRGAVMDYLLLIRQLIMSYGTPCEIEGMKYTDEQARRQRRNT
Ga0209085_10000759	F019426	N/A	MKKDGNPVLFHFRKEKMRVLVFGSKDWTDYNDLIRQLTVLIDDRKHFYPDDTEYIFVHTGMRGAENMVTEYIGKTEKFLRQKGFNIKEELVRDKSSLSDVSLIESNPDFALVFGDSSRNRSCLKLLEVYGISHRYIKE