Scaffold Ga0209085_1000041

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000041
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87135
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (36.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F043788	Metagenome / Metatranscriptome	155	Y
F050171	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100004132	F043788	AGGTGG	MGSFDDVYDMMQKMEDNNIEYLLITITKGKKQGKADVFYSLKDKSSMRILSQGLKAFNKEIDKIDEEGLEGDKDE
Ga0209085_100004166	F017268	N/A	VNLDITLLFNLVLGALSFLGGWLFTRVFSLFDKQEALFKEINDKTFSDFITLRKEMELESRKHQQEISDLALKISTTYVTKESFEAYFDRIEAKLDRNFDIIQNHLTKK
Ga0209085_100004192	F050171	N/A	MGMFNYIKIEQDLPLNDELKALNVDFKKEEFQTKELEENLMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFSEFFNKNKLVEDSREEVFRDDFTGVFTFGCYILGKDINDDDLFPDWKCVVIKGLVEEMSLITPVDRNSSKARIEADETFKKGLEDHDRKMRCPVYNFYFKYYVKTMNLIEWKLSIGIVKVINFLNWLQWKGVRKVIKILTPR