Scaffold Ga0209575_10179403

Overview

Basic Information

• Taxon OID: 3300027739
• Scaffold ID: Ga0209575_10179403
• Source Dataset Name: Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 756
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location

• Location Name: Crawford Collection of the Royal Observatory Edinburgh
• Coordinates
  • Lat. (^o): 55.9225
  • Long. (^o): -3.1724

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009745	Metagenome / Metatranscriptome	313	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209575_101794031	F092032	AGGAG	MSEVNEGVVCLFGIGLGQVASLFVQGYSVTSNFNNTGTVVDEQGVTRTVRYDDRRTEITVDGVAKLTSVPQLGAAFTFTAKTASAYPAGSASVSFNGVVTKVDDRGSSKGFVTVTVTAESYEGISY
Ga0209575_101794032	F009745	N/A	SAVTQTLPKAVVLCDSARAPGDLQEGLGNYDCSVRVTLFSNADDTTLAVHRERCAALSDCMKSVGLIQAAFASGGAALCYDVTYRSEDEGIDERSWATSFSFDILTCLNPAA