Scaffold Ga0209190_1098006

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1098006
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1357
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10980062	F037701	N/A	MIKSKEWRVSNRVWLGVGFNPRRIALGFSIDRFNTNIDFLWFWVSLEY
Ga0209190_10980063	F020851	N/A	MSEDIVDLAISMAEIDTGMQIPLEEREAMRQRILVRIEEINE
Ga0209190_10980065	F017788	AGGA	MKKIIITSLLISLLIPTASAQAATKSLNTKGNKASCKSIKTKYESEVMSKWSNGLASDQDVLKEIDLNIDMLAAKQKPTTGKIKTTIASWITAEKNTKIALDSKNVEAITSAMNLKISSVTNFDKLCKSIEK