Scaffold Ga0209190_1024149

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1024149
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3357
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F009682	Metagenome / Metatranscriptome	314	Y
F059659	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10241495	F001840	N/A	MKEEKDSAFLICDCFSHGLLVEKFEGEEEVHLSLFERGMDGRILRWSERLRWCWQILRYGKPWSDFIILNTDNQKKLKEFLENK
Ga0209190_10241496	F059659	AGGAGG	MGLYNSVDCHYPLPMPEDPKGYTGSHSFQTKDFECALDVYIIDKDGQLLIERRDSEWIEGDPNGKSFLDKMGHVKTIKTWLEPLTNTCTIQFYDFIDSNKTDYDYFITYEAVFINGKISSVKIINFEANENAKRKIRDAEFAKKNKENYQFRQTWQYKYFVKPYNRVISFIFFKTIKVLSFLSTTLYKIERNIRI
Ga0209190_10241497	F009682	N/A	MIKDLYMKNINDKILVQSDDLKYDGKNIIIPSYYASIVYDYLDNVNIKDMNLNDADMHDYLAFCSFFEAIIDHKADKGGN