NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1022604

Scaffold Ga0209190_1022604


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1022604 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3496
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050153Metagenome / Metatranscriptome145Y
F057381Metagenome / Metatranscriptome136N
F068423Metagenome / Metatranscriptome124N
F072350Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10226042F072350AGGAGMQDYYKAKFTWDYDDKRMRYDVTEWGDPVNGVRLGKVVFYSDVMEECIAMAEEYNYNHECEEWALFNNQECEFDV
Ga0209190_10226044F050153GAGGMSKGSRARPQDVSYDKYSSNWDSIFSKSPKEIDDAVIEDEAFKLIEERNKNVISDQKPD
Ga0209190_10226045F068423GAGGMDEDFDFDFPFEINFEKILTNNTILPMVRLLAADLMKNPYMSIGTYLQRARTEDLQLILEASEDEEDERLSDILLLAEMLAKAEGVETECIEDVYKHLNSFITLAAVASLERKKLIIADYDVMSFGEEYRHSTIAKRKPNE
Ga0209190_10226047F057381AGGAGMRYFFNDVEVTETEYKDLISKSTPDVPAKFVMAVPVEKAVPKTKPKPKKSVAKPASSGASKIDQAIELFKNNQGLTDAQFITLFQLKLGDISKGNASIYLKKVKERTK

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