Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1008723 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1008723 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6198
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6198

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048283	Metagenome / Metatranscriptome	148	N
F063654	Metagenome / Metatranscriptome	129	N
F063657	Metagenome / Metatranscriptome	129	N
F066734	Metagenome	126	Y
F078664	Metagenome / Metatranscriptome	116	N
F085612	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100872310	F048283	N/A	MAIAMWHHVGQTTKGEQVEIEVTYTPTLIGVGPEVGDDVNASCDAFEVQVHLELSARYPDADITVTRDSGHLADLSIVTHGFVDQRGVLTTRQAVWSDVWDMISPYGRYRRPVRGGILQASVPVVVVRPERRPDVFTILVDDASGDSVIECDEDEARAVMRSGFGAMA
Ga0209190_100872311	F063657	N/A	MNGDLMDDVVTEVSVTGAVTTDGRLRFRSPLDVEAWTHDHLVARLGWEFLIDGNENGVPRDTDQALERVQVRYIPEAVRRTMRGRLSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDR
Ga0209190_10087233	F078664	AGGCGG	VATIASLWAKAGGSQSGLHELAAIARKHCPNGRAFATSTMAMQSCGCPVHAYVRSEPGLYRLAHTERNRDAYVSNEWDLWSKEDDERVSAD
Ga0209190_10087236	F066734	GGAG	MRTRDLVQDALWIAFTAALAWMRSGARHWRRIVAATTMGIAIVRAVIWVAKAVASAGTVDAFLNLIGLGEYVQPFEQGVDNVIATVVAIILTVTPNG
Ga0209190_10087237	F063654	GGA	METRTTKVRATLAPRMDPTRYTHSYVVNAVPQYRGFTTVKGDHSVQHWGLISWDQQDRERRNEAGGQIAYLTERDGVYTISVVGPLTVRDWSAAKLRKARAHNGEWHDVWTGAAADGVTLMEAVARLRALRDAMQEDADAYRRGL
Ga0209190_10087238	F085612	AGG	VNVTDPEYDGEIVTLGIRIFEGVADDLPRWQPWIAGETAHCVASLYRHGANHFRPTSVTRGSTRGVWEIILRDGRYAVVPWGGGRDAETDLGTDRAVALAHLKERLRALTAGQPRGQMELGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1008723

Overview

Ecosystem & Geography

Associated Families

Sequences