NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1006246

Scaffold Ga0209190_1006246


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1006246 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7524
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F007170Metagenome / Metatranscriptome356N
F012219Metagenome / Metatranscriptome282Y
F024791Metagenome / Metatranscriptome204N
F058132Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100624610F007170GGTGGMAFEPAVIEQWIYETLTGDTTLMGLLAPDNRPNGFQMGVYNTIAPQTDPISRKQPITPYIVFDRAGNAGQDQDVLCGSRVFTYPTYRITVWDTASGAVSMNQSAAIMSRVDTLLDNIHVSSTTPRFYSRRESTAQTFGLESGGRTDFGVTAVYRFVTQQ
Ga0209190_100624611F024791AGGAGMPFTRTSALIGENCVVTVAFGGYQDGTPSAFTAETYTCIARSVRFSSSVNTVDVSALCDTQNKAQVTKANGSVEVEFLVDSVVNPIFFGKDGYYCQIVVTPGTLTAKTFVGVVTGTGLNIANEEALTESATITLGANGVTTAWS
Ga0209190_100624612F058132N/AMALQSLKQIPKDTDKGLLTVDLSDVAGDGAELRFREPKAADLFPDAKELGSLRVAFAEFPEAMLYQIYLLGRCYVADPTDSSDESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKEAKNDSEV
Ga0209190_10062465F001733GGAGGMNSISIKRLVVVVIVAFTAAFTSVFGDGVRTSEAHDLAELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQANSLKVGK
Ga0209190_10062466F012219AGGTGGMNLQNFYIQKEPAPSTDWRVFGDIYDNAGNLLGTFGEDGTSVNVWWVTQDDEFQSSIVYQFASIMAQQIASGAAE
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