Scaffold Ga0209190_1003886

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1003886
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9847
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F004599	Metagenome / Metatranscriptome	431	N
F007469	Metagenome / Metatranscriptome	350	Y
F016265	Metagenome / Metatranscriptome	248	Y
F043389	Metagenome / Metatranscriptome	156	N
F045061	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100388611	F002044	N/A	MANTRKPIKRKKINRRVVRQTPDPTKIDAHYIALHECYKAARKAGFSPEHAFWLMTEIKTFPNWVVGDGGIIPSIDPSDDEDDD
Ga0209190_100388615	F045061	N/A	MAITSKEINLEQLDKELGSQGLCADFNDPKKKLIVPADNSTVSEDELKTAIANHIAGPTQADVIKLNREQGLAKLKELGFTDDQIFALLNG
Ga0209190_100388617	F000468	AGTAGG	MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYLQITFVTLTGQTLPFDINDSLILQVKDTSAAYVNLFGGDITDITVSVGATGSNATVIQYSVLAMGSLVKLAKELYLGTISQDEDGNQIYDLLSSVLLGTWNDVPAATTWAGYDATETWANALNLGLGEIDTPGLYTMENRAAETDTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQNYLLTNGYVDLSANHALGQGLSTITRSGDIRNDVAINYGNNFGSQKTATSATSIATYGYKAESINSVLHSAVDAQAVADRYIAQRAFPLPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNLQNLPAQISGGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPIVETWQTIDPTLTWEYATIVA
Ga0209190_100388623	F016265	N/A	PYNGTRAVLADNLGQYTFSQSITNADILEANVIPSGVAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGLLGSYMDTESMAL
Ga0209190_10038865	F002162	GAGG	MLFLSFNQSNSIVPNYEYACDREGSSIVLDLPMQHEIPLCQVCGFELSRVYSAVPAIFKGTGWAGKSG
Ga0209190_10038866	F007469	AGGAGG	MADMIMIDGSGLTAKFTDNGVKVEPSIIVCDACNDDRLLHEGDLLRCYSCHSINRIP
Ga0209190_10038867	F004599	GGAG	MAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNIAFGSRESYIQNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMKKVNDEPIKNIYGKSGNSQIIEMALRKSFADDGKPASEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYYGYVCSAPKGEQCNAKWAVTAANGSWFFREEE
Ga0209190_10038869	F043389	AGG	MYAQIVCVYVGSDMIETTTPWLWLYCMLGIVIGWWAITKIMEQAFDRGFWSGRAAGWRAANEHYEKVRKLKSQSVFDYDKQN