Basic Information | |
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Taxon OID | 3300027736 Open in IMG/M |
Scaffold ID | Ga0209190_1003886 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9847 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (56.52%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000468 | Metagenome | 1102 | Y |
F002044 | Metagenome / Metatranscriptome | 599 | Y |
F002162 | Metagenome / Metatranscriptome | 588 | Y |
F004599 | Metagenome / Metatranscriptome | 431 | N |
F007469 | Metagenome / Metatranscriptome | 350 | Y |
F016265 | Metagenome / Metatranscriptome | 248 | Y |
F043389 | Metagenome / Metatranscriptome | 156 | N |
F045061 | Metagenome / Metatranscriptome | 153 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209190_100388611 | F002044 | N/A | MANTRKPIKRKKINRRVVRQTPDPTKIDAHYIALHECYKAARKAGFSPEHAFWLMTEIKTFPNWVVGDGGIIPSIDPSDDEDDD |
Ga0209190_100388615 | F045061 | N/A | MAITSKEINLEQLDKELGSQGLCADFNDPKKKLIVPADNSTVSEDELKTAIANHIAGPTQADVIKLNREQGLAKLKELGFTDDQIFALLNG |
Ga0209190_100388617 | F000468 | AGTAGG | MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYLQITFVTLTGQTLPFDINDSLILQVKDTSAAYVNLFGGDITDITVSVGATGSNATVIQYSVLAMGSLVKLAKELYLGTISQDEDGNQIYDLLSSVLLGTWNDVPAATTWAGYDATETWANALNLGLGEIDTPGLYTMENRAAETDTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQNYLLTNGYVDLSANHALGQGLSTITRSGDIRNDVAINYGNNFGSQKTATSATSIATYGYKAESINSVLHSAVDAQAVADRYIAQRAFPLPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNLQNLPAQISGGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPIVETWQTIDPTLTWEYATIVA |
Ga0209190_100388623 | F016265 | N/A | PYNGTRAVLADNLGQYTFSQSITNADILEANVIPSGVAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGLLGSYMDTESMAL |
Ga0209190_10038865 | F002162 | GAGG | MLFLSFNQSNSIVPNYEYACDREGSSIVLDLPMQHEIPLCQVCGFELSRVYSAVPAIFKGTGWAGKSG |
Ga0209190_10038866 | F007469 | AGGAGG | MADMIMIDGSGLTAKFTDNGVKVEPSIIVCDACNDDRLLHEGDLLRCYSCHSINRIP |
Ga0209190_10038867 | F004599 | GGAG | MAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNIAFGSRESYIQNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMKKVNDEPIKNIYGKSGNSQIIEMALRKSFADDGKPASEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYYGYVCSAPKGEQCNAKWAVTAANGSWFFREEE |
Ga0209190_10038869 | F043389 | AGG | MYAQIVCVYVGSDMIETTTPWLWLYCMLGIVIGWWAITKIMEQAFDRGFWSGRAAGWRAANEHYEKVRKLKSQSVFDYDKQN |
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