NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1003886

Scaffold Ga0209190_1003886


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1003886 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9847
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (56.52%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F002044Metagenome / Metatranscriptome599Y
F002162Metagenome / Metatranscriptome588Y
F004599Metagenome / Metatranscriptome431N
F007469Metagenome / Metatranscriptome350Y
F016265Metagenome / Metatranscriptome248Y
F043389Metagenome / Metatranscriptome156N
F045061Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100388611F002044N/AMANTRKPIKRKKINRRVVRQTPDPTKIDAHYIALHECYKAARKAGFSPEHAFWLMTEIKTFPNWVVGDGGIIPSIDPSDDEDDD
Ga0209190_100388615F045061N/AMAITSKEINLEQLDKELGSQGLCADFNDPKKKLIVPADNSTVSEDELKTAIANHIAGPTQADVIKLNREQGLAKLKELGFTDDQIFALLNG
Ga0209190_100388617F000468AGTAGGMTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYLQITFVTLTGQTLPFDINDSLILQVKDTSAAYVNLFGGDITDITVSVGATGSNATVIQYSVLAMGSLVKLAKELYLGTISQDEDGNQIYDLLSSVLLGTWNDVPAATTWAGYDATETWANALNLGLGEIDTPGLYTMENRAAETDTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQNYLLTNGYVDLSANHALGQGLSTITRSGDIRNDVAINYGNNFGSQKTATSATSIATYGYKAESINSVLHSAVDAQAVADRYIAQRAFPLPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNLQNLPAQISGGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPIVETWQTIDPTLTWEYATIVA
Ga0209190_100388623F016265N/APYNGTRAVLADNLGQYTFSQSITNADILEANVIPSGVAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGLLGSYMDTESMAL
Ga0209190_10038865F002162GAGGMLFLSFNQSNSIVPNYEYACDREGSSIVLDLPMQHEIPLCQVCGFELSRVYSAVPAIFKGTGWAGKSG
Ga0209190_10038866F007469AGGAGGMADMIMIDGSGLTAKFTDNGVKVEPSIIVCDACNDDRLLHEGDLLRCYSCHSINRIP
Ga0209190_10038867F004599GGAGMAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNIAFGSRESYIQNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMKKVNDEPIKNIYGKSGNSQIIEMALRKSFADDGKPASEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYYGYVCSAPKGEQCNAKWAVTAANGSWFFREEE
Ga0209190_10038869F043389AGGMYAQIVCVYVGSDMIETTTPWLWLYCMLGIVIGWWAITKIMEQAFDRGFWSGRAAGWRAANEHYEKVRKLKSQSVFDYDKQN

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